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  1. OMG Issue

BSA — section 2.1.9 (p. 2-25) BioSequence

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  • Key: BSA-36
  • Legacy Issue Number: 3811
  • Status: closed  
  • Source: SciTegic Inc. ( Scott Markel)
  • Summary:

    section 2.1.9 (p. 2-25) BioSequence
    The descriptions for both get_annotations() and num_annotations() need
    to be made more precise.

    Change

    Only the SeqAnnotations that overlap seq_region will be returned.

    to

    Only the SeqAnnotations that overlap seq_region and have compatible
    StrandTypes will be returned.

    Add the following tables.

    BioSequence Type Valid StrandTypes
    BioSequence STRAND_NOT_KNOWN
    NucleotideSequence STRAND_NOT_KNOWN,STRAND_PLUS,STRAND_MINUS,
    STRAND_BOTH
    AminoAcidSequence STRAND_NOT_APPLICABLE

    StrandType Matching StrandTypes
    STRAND_NOT_KNOWN STRAND_NOT_KNOWN, STRAND_PLUS, STRAND_MINUS,
    STRAND_BOTH
    STRAND_NOT_APPLICABLE STRAND_NOT_APPLICABLE
    STRAND_PLUS STRAND_NOT_KNOWN, STRAND_PLUS, STRAND_BOTH
    STRAND_MINUS STRAND_NOT_KNOWN, STRAND_MINUS, STRAND_BOTH
    STRAND_BOTH STRAND_NOT_KNOWN, STRAND_PLUS, STRAND_MINUS,
    STRAND_BOTH
  • Reported: BSA 1.0b1 — Thu, 7 Sep 2000 04:00 GMT
  • Disposition: Resolved — BSA 1.0
  • Disposition Summary:

    accepted
  • Updated: Fri, 6 Mar 2015 20:57 GMT