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  1. OMG Issue

BSA — The spec mentions IUPAC-IUB single letter codes

  • Key: BSA-22
  • Legacy Issue Number: 3691
  • Status: closed  
  • Source: med.uu.nl ( Philip Lijnzaad)
  • Summary:

    The spec mentions IUPAC-IUB single letter codes,

    I think this has been renamed to IUPAC-IUBMB Joint Commission on
    Biochemical Nomenclature (JCBN); the best web site for this is

    http://www.chem.qmw.ac.uk/iupac/AminoAcid/ (amino acids)
    http://www.chem.qmw.ac.uk/iubmb/misc/naseq.html (nucleic acids)

    http://www.chem.qmw.ac.uk/iubmb/nomenclature/ (all biostandards)

    Might be useful to include in the references.

    IUB allows termination characters in amino acids; I think we should not
    allow them. Also, it might be good to explicitly state that gap characters
    ('-' or so) are not supposed to be in sequences (this is fairly implicit in
    IUPAC, so I think had doesn't hurt to be clear about this).

  • Reported: BSA 1.0b1 — Fri, 9 Jun 2000 04:00 GMT
  • Disposition: Resolved — BSA 1.0
  • Disposition Summary:

    accepted

  • Updated: Fri, 6 Mar 2015 20:57 GMT