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Key: PAGEOM_-21
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Legacy Issue Number: 14018
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Status: closed
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Source: University of Helsinki ( Juha Muilu)
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Summary:
In page-om model there are some missing cardinalities, which means
that default cardinality (one-to-one) is used, which is wrong.
For example association between Assayed_genomic_genotype and
Observation_target -
Reported: PAGE-OM 1.0b2 — Mon, 22 Jun 2009 04:00 GMT
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Disposition: Resolved — PAGE-OM 1.0
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Disposition Summary:
- Add the following text to the beginning of the Chapter 7.1 (Detailed Model Documentation) - just before the generated text:
- Notes
Those cardinalities that are not explicitly given in PIM should be interpreted as "0..1". - Change the following cardinalities in the model, then generate new documentation (chapter 7):
Abstract_population-Geographic_location / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Abstract_value-Assayed_genomic_genotype / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Abstract_value-Band_size / Changed from: [1..1]<[undef..undef] to: [1..1]<[0..1]
Abstract_value-Defining_feature / Changed from: [1..1]<[undef..undef] to: [1..1]<[0..1]
Abstract_value-Melting_temperature / Changed from: [1..1]<[undef..undef] to: [1..1]<[0..1]
Algorithm-Experiment_result / Changed from: [undef..undef]<[undef..undef] to: [0..1]<[0..1]
Algorithm-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Anatomic_location-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Annotation-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Assayed_genomic_genotype-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Association_study-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Band_size-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Bibliographic_reference-Bibref_description / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Bibliographic_reference-Bibref_scope / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Bibliographic_reference-Bibref_subject / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Bibliographic_reference-Db_xref / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Bibliographic_reference-Entry_status / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Bibliographic_reference-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Bibliographic_reference-Provider / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Bibliographic_reference-Provider (2) / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Bibliographic_reference-Provider (3) / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Bibliographic_reference-Provider (4) / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Bibref_description-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Bibref_subject-Subject_descriptor / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Bibref_subject-Subject_descriptor (2) / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Bibref_subject-Subject_descriptor (3) / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Book-Book_article / Changed from: [1..1]<[undef..undef] to: [1..1]<[0..1]
Book-Person / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
CDS-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Conclusion-Genotype_phenotype_correlation_experiment / Changed from: [undef..undef]<[undef..undef] to: [0..1]<[0..1]
Conclusion-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Consensus_genomic_genotype-Haplotype_derivation_methods / Changed from: [undef..undef]>[0..*] to: [0..1]<[0..*]
Constraint-Value / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Contributor-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Cytogenetic_location-Cytogenetic_map / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Cytogenetic_location-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Cytogenetic_map-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Db_xref-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Defining_feature-Latent_genotype_specification / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Enum-Value / Changed from: [undef..undef]<[0..*] to: [0..1]<[0..*]
Environment_feature-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Error-Numeric_value / Changed from: [0..1]<[undef..undef] to: [0..1]<[0..1]
Evidence-Identifiable [supporting_source] / Changed from: [undef..undef]<[0..*] to: [0..1]<[0..*]
Evidence-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Evidence-Person / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Evidence-Value / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Evidence_code-Value [supporting_evidence] / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Exon-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Experiment_result-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Frequency-Frequency_set / Changed from: [1..*]>[undef..undef] to: [1..*]>[0..1]
Frequency-Genomic_variation / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Frequency_set-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Functional_change-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Gene_based_haplotype-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genetic_location-Genetic_map / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Genetic_location-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genetic_map-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genic_variation-Genomic_gene_structure / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Genic_variation-Genomic_gene_structure (2) / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genic_variation-Genomic_variation / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Genic_variation-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_allele-Genomic_reference_allele / Changed from: [undef..undef]<[undef..undef] to: [0..1]<[0..1]
Genomic_allele-Genomic_variation / Changed from: [0..*]>[undef..undef] to: [0..*]>[0..1]
Genomic_allele-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_allele_population_frequency-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_gene_structure-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_genotype_population_frequency-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_haplotype-Haplotype_derivation_methods / Changed from: [0..*]<[undef..undef] to: [0..*]>[0..1]
Genomic_haplotype-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_haplotype_population_frequency-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_observation-Genotype_phenotype_correlation_experiment / Changed from: [undef..undef]<[undef..undef] to: [0..*]<[0..1]
Genomic_reference_allele-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_variation-Ordered_location / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Genomic_variation-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genomic_variation-Reference_genomic_landmark / Changed from: [undef..undef]<[undef..undef] to: [0..1]<[0..1]
Genomic_variation-Reference_genomic_location / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Genomic_variation-Reference_genomic_location (2) / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genotype_phenotype_correlation_experiment-Genotype_phenotype_correlation_experiment / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Genotype_phenotype_correlation_experiment-Hypothesis / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Genotype_phenotype_correlation_experiment-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Geographic_location-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Haplotype_block-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Haplotype_derivation_methods-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Haplotype_map-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Heterozygosity-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Hypothesis-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Identifiable-Source / Changed from: [undef..undef]>[0..1] to: [0..1]>[0..1]
Individual-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Journal-Journal_article / Changed from: [1..1]<[undef..undef] to: [1..1]<[0..1]
Journal-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Latent_genotype-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Lifestyle_feature-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Location-Location / Changed from: [undef..undef]<[0..*] to: [0..1]<[0..*]
Location-Map / Changed from: [undef..undef]>[undef..undef] to: [0..*]>[0..1]
Location_on_plate-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Location_on_plate-Plate [wells] / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Melting_temperature-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Molecular_sample-Molecular_sample / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Molecular_sample-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Multi_vartiation_assay-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Multi_vartiation_assay-Variation_assay / Changed from: [undef..undef]<[0..*] to: [0..1]<[0..*]
Neighbour_variation-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Observable_feature-Observation_method / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Observable_feature_category-Observable_feature_category / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Observable_feature_category-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Observation_method-Observed_value / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Observation_method-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Observed_value-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Observed_value-Time_accuracy / Changed from: [undef..undef]>[0..1] to: [0..1]>[0..1]
Observed_value-Value / Changed from: [undef..undef]>[1..1] to: [0..1]>[1..1]
Oligo-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Organization-Page / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
Page-Panel / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Person / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Phenotype_feature / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Plate / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Reference_genomic_assembly / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Reference_genomic_landmark / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Reference_genomic_location / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Run / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Service / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Source / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Structural_change / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Subject_descriptor / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Taxon / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Transcription_change / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Translation_change / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Page-Variation_assay / Changed from: [undef..undef]>[0..*] to: [0..1]>[0..*]
Panel-Panel / Changed from: [0..*]<[undef..undef] to: [0..1]<[0..1]
Patent-Provider / Changed from: [undef..undef]>[undef..undef] to: [0..1]>[0..1]
Reference_genomic_assembly-Reference_genomic_location / Changed from: [undef..undef]<[0..*] to: [0..1]<[0..*]
Reference_genomic_landmark-Reference_genomic_location / Changed from: [undef..undef]<[0..*] to: [0..1]<[0..*]
Unit-Value / Changed from: [0..1]>[undef..undef] to: [0..1]>[0..1]
Value-Value / Changed from: [0..*]<[undef..undef] to: [0..*]<[0..1]
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Updated: Fri, 6 Mar 2015 21:47 GMT