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Key: PAGEOM_-19
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Legacy Issue Number: 13023
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Status: closed
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Source: Japan Biological Informatics Consortium ( Martin Senger)
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Summary:
The PSM (the XML Schema) does not have any top-level tag. Its absence makes it very hard to produce a real-life data in this data exchange format.
Suggested solution: Add a new file, named all.xsd, that includes (imports) all so far defined xsd files, that defines the top level tag "page", and that also defined a list of tags (from the existing PSM) that can be the direct children of the top-level "page" tag. The list has to be yet defined by the FTF members.
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Reported: PAGE-OM 1.0b2 — Fri, 31 Oct 2008 04:00 GMT
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Disposition: Resolved — PAGE-OM 1.0
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Disposition Summary:
Add a new file, named all.xsd, that includes (imports) all so far defined xsd files, that defines the top level tag "page", and that also defined a list of tags (from the existing PSM) that can be the direct children of the top-level "page" tag. The list of children is:
Algorithm
Anatomic_location
Annotation
Assayed_genomic_genotype
Association_study
Band_size
Bibliographic_reference
Bibref_description
CDS
Conclusion
Contributor
Cytogenetic_location
Cytogenetic_map
Db_xref
Environment_feature
Evidence
Exon
Experiment_result
Frequency_set
Functional_change
Gene_based_haplotype
Genetic_location
Genetic_map
Genic_variation
Genomic_allele
Genomic_allele_population_frequency
Genomic_gene_structure
Genomic_genotype_population_frequency
Genomic_haplotype
Genomic_haplotype_population_frequency
Genomic_reference_allele
Genomic_variation
Genotype_phenotype_correlation_experiment
Geographic_location
Haplotype_block
Haplotype_derivation_methods
Haplotype_map
Heterozygosity
Hypothesis
Individual
Journal
Latent_genotype
Lifestyle_feature
Location_on_plate
Melting_temperature
Molecular_sample
Multi_vartiation_assay
Neighbour_variation
Observable_feature_category
Observation_method
Observed_value
Oligo
Organization
Panel
Person
Phenotype_feature
Plate
Reference_genomic_assembly
Reference_genomic_landmark
Reference_genomic_location
Run
Service
Source
Structural_change
Subject_descriptor
Taxon
Transcription_change
Translation_change
Variation_assay -
Updated: Fri, 6 Mar 2015 21:47 GMT