PAGE-OM 1.0 FTF Avatar
  1. OMG Issue

PAGEOM_ — PAGE-OM: top level XML tag

  • Key: PAGEOM_-19
  • Legacy Issue Number: 13023
  • Status: closed  
  • Source: Japan Biological Informatics Consortium ( Martin Senger)
  • Summary:

    The PSM (the XML Schema) does not have any top-level tag. Its absence makes it very hard to produce a real-life data in this data exchange format.

    Suggested solution: Add a new file, named all.xsd, that includes (imports) all so far defined xsd files, that defines the top level tag "page", and that also defined a list of tags (from the existing PSM) that can be the direct children of the top-level "page" tag. The list has to be yet defined by the FTF members.

  • Reported: PAGE-OM 1.0b2 — Fri, 31 Oct 2008 04:00 GMT
  • Disposition: Resolved — PAGE-OM 1.0
  • Disposition Summary:

    Add a new file, named all.xsd, that includes (imports) all so far defined xsd files, that defines the top level tag "page", and that also defined a list of tags (from the existing PSM) that can be the direct children of the top-level "page" tag. The list of children is:

    Algorithm
    Anatomic_location
    Annotation
    Assayed_genomic_genotype
    Association_study
    Band_size
    Bibliographic_reference
    Bibref_description
    CDS
    Conclusion
    Contributor
    Cytogenetic_location
    Cytogenetic_map
    Db_xref
    Environment_feature
    Evidence
    Exon
    Experiment_result
    Frequency_set
    Functional_change
    Gene_based_haplotype
    Genetic_location
    Genetic_map
    Genic_variation
    Genomic_allele
    Genomic_allele_population_frequency
    Genomic_gene_structure
    Genomic_genotype_population_frequency
    Genomic_haplotype
    Genomic_haplotype_population_frequency
    Genomic_reference_allele
    Genomic_variation
    Genotype_phenotype_correlation_experiment
    Geographic_location
    Haplotype_block
    Haplotype_derivation_methods
    Haplotype_map
    Heterozygosity
    Hypothesis
    Individual
    Journal
    Latent_genotype
    Lifestyle_feature
    Location_on_plate
    Melting_temperature
    Molecular_sample
    Multi_vartiation_assay
    Neighbour_variation
    Observable_feature_category
    Observation_method
    Observed_value
    Oligo
    Organization
    Panel
    Person
    Phenotype_feature
    Plate
    Reference_genomic_assembly
    Reference_genomic_landmark
    Reference_genomic_location
    Run
    Service
    Source
    Structural_change
    Subject_descriptor
    Taxon
    Transcription_change
    Translation_change
    Variation_assay

  • Updated: Fri, 6 Mar 2015 21:47 GMT